STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_5250PFAM: ABC transporter related; peptidase C39 bacteriocin processing; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: pdi:BDI_2935 ABC transporter ATP-binding protein. (802 aa)    
Predicted Functional Partners:
Dfer_5251
Hypothetical protein; KEGG: bth:BT_4289 putative hemolysin secretion protein.
 
 
 0.953
Dfer_1691
Hypothetical protein; KEGG: pdi:BDI_3168 putative hemolysin secretion transport system membrane protein.
 
 
 0.893
Dfer_5247
PFAM: peptidase C39 bacteriocin processing; Vitamin K epoxide reductase; KEGG: pdi:BDI_0153 hypothetical protein.
 
     0.854
Dfer_1688
PFAM: Vitamin K epoxide reductase; SMART: Vitamin K epoxide reductase; KEGG: pdi:BDI_0153 hypothetical protein.
 
     0.782
Dfer_5249
PFAM: glycosyl transferase family 2; KEGG: GSVIVT00024554001; assembled CDS.
       0.700
Dfer_4909
PFAM: secretion protein HlyD family protein; KEGG: fjo:Fjoh_1163 secretion protein HlyD family protein.
 
 
 0.666
Dfer_0709
PFAM: secretion protein HlyD family protein; KEGG: fjo:Fjoh_3960 secretion protein HlyD family protein.
  
 
 0.533
Dfer_2020
PFAM: secretion protein HlyD family protein; KEGG: fjo:Fjoh_4903 secretion protein HlyD family protein.
  
 
 0.533
Dfer_2865
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: fjo:Fjoh_1672 RND family efflux transporter MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
 
 0.533
Dfer_5637
KEGG: pdi:BDI_1336 hypothetical protein.
  
 
 0.533
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
Server load: low (40%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.