STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_5644TIGRFAM: L-fucose transporter; glucose/galactose transporter; PFAM: major facilitator superfamily MFS_1; KEGG: fjo:Fjoh_4128 L-fucose transporter. (417 aa)    
Predicted Functional Partners:
Dfer_5643
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rfr:Rfer_3136 short chain dehydrogenase.
 
    0.748
Dfer_5642
PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; KEGG: fjo:Fjoh_4119 alcohol dehydrogenase.
     
 0.658
Dfer_5741
PFAM: protein of unknown function DUF718; KEGG: fjo:Fjoh_2046 hypothetical protein.
 
  
 0.587
Dfer_5740
PFAM: amidohydrolase 2; KEGG: gfo:GFO_1704 amidohydrolase family protein.
 
  
 0.496
Dfer_5645
Two component transcriptional regulator, LytTR family; PFAM: LytTr DNA-binding region; response regulator receiver; SMART: response regulator receiver; KEGG: chu:CHU_0254 response regulator.
       0.491
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.