STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACU96744.1PFAM: CRISPR-associated protein Cse1 (CRISPR_cse1); TIGRFAM: CRISPR-associated protein, Cse1 family. (525 aa)    
Predicted Functional Partners:
ACU96747.1
PFAM: CRISPR-associated protein (Cas_Cas5e); TIGRFAM: CRISPR-associated protein Cas5, Ecoli subtype; CRISPR-associated protein Cas5, N-terminal domain.
 
 
 0.991
ACU96746.1
PFAM: CT1975-like protein; TIGRFAM: CRISPR-associated protein, Cse4 family.
 
 
 0.972
ACU96748.1
PFAM: CRISPR associated protein; TIGRFAM: CRISPR-associated protein, Cse3 family.
 
 
 
 0.961
ACU96743.1
TIGRFAM: CRISPR-associated helicase Cas3.
 
 
 0.954
ACU96745.1
PFAM: CRISPR-associated protein Cse2 (CRISPR_cse2); TIGRFAM: CRISPR-associated protein, Cse2 family.
  
 
 0.920
ACU96431.1
CRISPR-associated helicase Cas3; PFAM: Helicase conserved C-terminal domain; TIGRFAM: CRISPR-associated helicase Cas3.
 
 
 0.910
ACU96434.1
PFAM: CT1975-like protein; TIGRFAM: CRISPR-associated protein, Cse4 family.
 
 
 0.891
cas1
CRISPR-associated protein, Cas1 family; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.
 
  
 0.867
ACU96435.1
PFAM: CRISPR-associated protein (Cas_Cas5e); TIGRFAM: CRISPR-associated protein Cas5, N-terminal domain; CRISPR-associated protein Cas5, E. coli subtype.
 
 
 0.866
ACU96764.1
CRISPR-associated helicase Cas3; PFAM: Helicase conserved C-terminal domain; TIGRFAM: CRISPR-associated helicase Cas3.
 
 
 0.839
Your Current Organism:
Saccharomonospora viridis
NCBI taxonomy Id: 471857
Other names: S. viridis DSM 43017, Saccharomonospora viridis ATCC 15386, Saccharomonospora viridis DSM 43017, Saccharomonospora viridis NCIB 9602, Saccharomonospora viridis NRRL B-3044, Saccharomonospora viridis str. DSM 43017, Saccharomonospora viridis strain DSM 43017
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