STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACU98543.1Hypothetical protein. (137 aa)    
Predicted Functional Partners:
ACU98545.1
Flp pilus assembly protein TadC; PFAM: Bacterial type II secretion system protein F domain.
  
  
 0.866
ACU98544.1
Hypothetical protein.
 
    0.863
ACU98546.1
Flp pilus assembly protein TadB; PFAM: Bacterial type II secretion system protein F domain.
  
  
 0.862
ACU98547.1
Flp pilus assembly protein, ATPase CpaF; PFAM: Type II/IV secretion system protein.
  
  
 0.861
ACU98548.1
Hypothetical protein.
  
  
 0.838
ACU98542.1
Hypothetical protein.
       0.833
ACU98240.1
PFAM: SAF domain; TIGRFAM: Flp pilus assembly protein CpaB.
  
  
 0.757
ACU98541.1
Hypothetical protein.
       0.623
ACU98456.1
PFAM: GAF domain; Stage II sporulation protein E (SpoIIE); Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
  
    0.586
ACU95430.1
PFAM: GAF domain; EAL domain; GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain.
   
  
 0.460
Your Current Organism:
Saccharomonospora viridis
NCBI taxonomy Id: 471857
Other names: S. viridis DSM 43017, Saccharomonospora viridis ATCC 15386, Saccharomonospora viridis DSM 43017, Saccharomonospora viridis NCIB 9602, Saccharomonospora viridis NRRL B-3044, Saccharomonospora viridis str. DSM 43017, Saccharomonospora viridis strain DSM 43017
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.