STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACU98792.1Hypothetical protein. (132 aa)    
Predicted Functional Partners:
ACU98791.1
PFAM: SpoU rRNA Methylase family.
       0.780
ACU97868.1
Hypothetical protein.
  
     0.724
ACU98790.1
PFAM: Protein of unknown function (DUF574).
 
     0.649
ACU95147.1
PFAM: Copper resistance protein D.
  
     0.575
pyrE
Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP).
       0.566
ACU97419.1
Hypothetical protein.
  
     0.510
ACU96271.1
Anti-sigma regulatory factor (Ser/Thr protein kinase).
  
     0.506
ACU97629.1
UDP-galactopyranose mutase; PFAM: Flavin containing amine oxidoreductase; TIGRFAM: phytoene desaturase.
 
     0.491
ACU96103.1
PFAM: PAP2 superfamily.
  
     0.472
ACU98794.1
Short-chain dehydrogenase of unknown substrate specificity; PFAM: short chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.458
Your Current Organism:
Saccharomonospora viridis
NCBI taxonomy Id: 471857
Other names: S. viridis DSM 43017, Saccharomonospora viridis ATCC 15386, Saccharomonospora viridis DSM 43017, Saccharomonospora viridis NCIB 9602, Saccharomonospora viridis NRRL B-3044, Saccharomonospora viridis str. DSM 43017, Saccharomonospora viridis strain DSM 43017
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