STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LO55_4972Catalase family protein; Belongs to the catalase family. (493 aa)    
Predicted Functional Partners:
paaN
paaN-DH: phenylacetic acid degradation protein paaN.
   
 0.862
hfq
RNA chaperone Hfq; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family.
    
 
 0.804
ahpC
Peroxiredoxin; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. AhpC/Prx1 subfamily.
  
 
 0.755
LO55_2223
Catalase family protein; Serves to protect cells from the toxic effects of hydrogen peroxide.
 
0.749
LO55_2391
Hypothetical protein; C-terminal domain of 1-Cys peroxiredoxin family protein.
  
 
 0.730
LO55_1001
4Fe-4S dicluster domain protein.
   
 0.700
icd
Prok_nadp_idh: isocitrate dehydrogenase, NADP-dependent.
   
 0.686
LO55_838
Hypothetical protein; Bacterial transglutaminase-like N-terminal region family protein.
   
   0.675
LO55_1713
DJ-1/PfpI family protein.
  
 0.632
LO55_1798
Hypothetical protein; N-terminal domain of DJ-1_PfpI family protein.
  
 0.632
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.