STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Nhal_0607TIGRFAM: addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system; KEGG: bgl:bglu_1g12000 hypothetical protein. (85 aa)    
Predicted Functional Partners:
Nhal_0606
PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: noc:Noc_2542 XRE family transcriptional regulator.
 
     0.917
Nhal_1128
PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: noc:Noc_2542 XRE family transcriptional regulator.
 
     0.659
Nhal_2531
TIGRFAM: addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system; KEGG: gme:Gmet_A3569 addiction module toxin, RelE/StbE.
  
     0.470
Your Current Organism:
Nitrosococcus halophilus
NCBI taxonomy Id: 472759
Other names: N. halophilus Nc 4, Nitrosococcus halophilus Nc 4, Nitrosococcus halophilus str. Nc 4, Nitrosococcus halophilus strain Nc 4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.