STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Nhal_3240TIGRFAM: FemAB-related protein, PEP-CTERM system-associated; KEGG: noc:Noc_1980 hypothetical protein. (352 aa)    
Predicted Functional Partners:
Nhal_3241
TIGRFAM: polysaccharide deactylase family protein, PEP-CTERM locus subfamily; PFAM: polysaccharide deacetylase; KEGG: noc:Noc_1981 polysaccharide deacetylase.
 
   
 0.959
Nhal_3238
TIGRFAM: exosortase 1; eight transmembrane protein EpsH; EpsI family protein; KEGG: noc:Noc_1978 hypothetical protein.
 
     0.956
Nhal_3239
TIGRFAM: sugar transferase, PEP-CTERM/EpsH1 system associated; KEGG: noc:Noc_1979 glycosyl transferase group 1.
 
     0.956
Nhal_3237
TIGRFAM: sugar transferase, PEP-CTERM/EpsH1 system associated; PFAM: glycosyl transferase group 1; KEGG: noc:Noc_1977 glycosyl transferase, group 1.
 
     0.954
Nhal_3233
PFAM: glycosyl transferase group 1; KEGG: noc:Noc_1973 glycosyl transferase, group 1.
 
     0.865
Nhal_3242
TIGRFAM: PEP-CTERM system associated protein; KEGG: noc:Noc_1982 hypothetical protein.
 
     0.857
Nhal_3232
PFAM: glycosyl transferase group 1; KEGG: noc:Noc_1972 glycosyl transferase, group 1.
 
     0.853
Nhal_3231
KEGG: noc:Noc_1971 capsular polysaccharide biosynthesis protein CapK.
 
     0.844
Nhal_3244
TIGRFAM: polysaccharide chain length determinant protein, PEP-CTERM locus subfamily; PFAM: lipopolysaccharide biosynthesis protein; KEGG: noc:Noc_1984 lipopolysaccharide biosynthesis.
 
     0.831
Nhal_3245
TIGRFAM: polysaccharide export protein, PEP-CTERM sytem-associated; PFAM: polysaccharide export protein; KEGG: noc:Noc_1985 polysaccharide export protein.
 
     0.827
Your Current Organism:
Nitrosococcus halophilus
NCBI taxonomy Id: 472759
Other names: N. halophilus Nc 4, Nitrosococcus halophilus Nc 4, Nitrosococcus halophilus str. Nc 4, Nitrosococcus halophilus strain Nc 4
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