ENSNMLP00000010944 protein (Neogobius melanostomus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSNMLP00000010944

annotation not available (348 aa)

Predicted Functional Partners:

ENSNMLP00000015221

0.847

ENSNMLP00000027490

0.847

ENSNMLP00000028198

0.847

ENSNMLP00000003288

0.824

ENSNMLP00000003291

0.762

ENSNMLP00000007756

0.762

ENSNMLP00000006455

0.733

ENSNMLP00000015249

0.726

ENSNMLP00000035923

0.726

ENSNMLP00000043058

0.724

Your Current Organism:

Neogobius melanostomus

NCBI taxonomy Id: 47308
Other names: Apollonia melanostoma, Apollonia melanostomus, Gobius melanostomus, N. melanostomus, round goby

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
ENSNMLP00000003288	ENSNMLP00000003291	annotation not available	Guanine nucleotide binding protein (G protein), alpha 14.	0.802
ENSNMLP00000003288	ENSNMLP00000006455	annotation not available	annotation not available	0.880
ENSNMLP00000003288	ENSNMLP00000007756	annotation not available	annotation not available	0.804
ENSNMLP00000003288	ENSNMLP00000010944	annotation not available	annotation not available	0.824
ENSNMLP00000003288	ENSNMLP00000015249	annotation not available	annotation not available	0.821
ENSNMLP00000003288	ENSNMLP00000027490	annotation not available	annotation not available	0.838
ENSNMLP00000003288	ENSNMLP00000028198	annotation not available	Guanine nucleotide binding protein (G protein), alpha 14a.	0.798
ENSNMLP00000003288	ENSNMLP00000035923	annotation not available	annotation not available	0.821
ENSNMLP00000003288	ENSNMLP00000043058	annotation not available	Si:dkey-148a17.6.	0.436
ENSNMLP00000003291	ENSNMLP00000003288	Guanine nucleotide binding protein (G protein), alpha 14.	annotation not available	0.802
ENSNMLP00000003291	ENSNMLP00000006455	Guanine nucleotide binding protein (G protein), alpha 14.	annotation not available	0.877
ENSNMLP00000003291	ENSNMLP00000010944	Guanine nucleotide binding protein (G protein), alpha 14.	annotation not available	0.762
ENSNMLP00000003291	ENSNMLP00000015249	Guanine nucleotide binding protein (G protein), alpha 14.	annotation not available	0.704
ENSNMLP00000003291	ENSNMLP00000027490	Guanine nucleotide binding protein (G protein), alpha 14.	annotation not available	0.820
ENSNMLP00000003291	ENSNMLP00000028198	Guanine nucleotide binding protein (G protein), alpha 14.	Guanine nucleotide binding protein (G protein), alpha 14a.	0.575
ENSNMLP00000003291	ENSNMLP00000035923	Guanine nucleotide binding protein (G protein), alpha 14.	annotation not available	0.703
ENSNMLP00000003291	ENSNMLP00000043058	Guanine nucleotide binding protein (G protein), alpha 14.	Si:dkey-148a17.6.	0.720
ENSNMLP00000006455	ENSNMLP00000003288	annotation not available	annotation not available	0.880
ENSNMLP00000006455	ENSNMLP00000003291	annotation not available	Guanine nucleotide binding protein (G protein), alpha 14.	0.877
ENSNMLP00000006455	ENSNMLP00000007756	annotation not available	annotation not available	0.877