STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDQ61679.1Hypothetical protein. (96 aa)    
Predicted Functional Partners:
SDQ46274.1
ATP-dependent DNA ligase.
  
     0.599
SDQ61653.1
Predicted flavoprotein CzcO associated with the cation diffusion facilitator CzcD.
       0.576
SDQ75728.1
Uncharacterized HhH-GPD family protein.
  
     0.513
SDQ46306.1
DNA ligase D, polymerase domain-containing protein.
  
     0.492
SDR22077.1
formamidopyrimidine-DNA glycosylase; Belongs to the FPG family.
  
     0.484
SDR13161.1
DNA ligase D.
  
     0.473
SDR20007.1
Uncharacterized membrane protein.
  
     0.439
SDQ61625.1
Short-chain dehydrogenase.
       0.428
SDR01699.1
DNA-binding transcriptional regulator, AcrR family.
  
     0.400
Your Current Organism:
Tsukamurella pulmonis
NCBI taxonomy Id: 47312
Other names: ATCC 700081, CCUG 35732, CIP 104791, DSM 44142, DSM 44990 [[Tsukamurella spongiae]], JCM 10111, JCM 14882 [[Tsukamurella spongiae]], NCTC 13230, NRRL B-24467 [[Tsukamurella spongiae]], T. pulmonis, Tsukamurella sp. K362, Tsukamurella spongiae, Tsukamurella spongiae Olson et al. 2007, strain K362 [[Tsukamurella spongiae]]
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.