STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDR26937.1Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. (494 aa)    
Predicted Functional Partners:
SDR26947.1
Thioredoxin reductase (NADPH).
 
 0.998
SDQ54645.1
Adenylate cyclase.
   
 0.993
SDR23230.1
Adenylate cyclase.
   
 0.993
SDR26925.1
Ubiquitin-hydrolase Zn-finger-containing protein.
 
 
 0.982
SDQ74076.1
Glutamate synthase (NADPH/NADH) large chain.
  
 
 0.980
SDQ50382.1
Adenylate cyclase.
   
 0.952
SDQ75258.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
 
 0.950
SDQ92812.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
 
 0.949
SDR28959.1
Glutamate synthase (NADPH/NADH) large chain.
  
 
 0.948
SDQ61303.1
Phthiocerol/phenolphthiocerol synthesis type-I polyketide synthase B.
  
 0.933
Your Current Organism:
Tsukamurella pulmonis
NCBI taxonomy Id: 47312
Other names: ATCC 700081, CCUG 35732, CIP 104791, DSM 44142, DSM 44990 [[Tsukamurella spongiae]], JCM 10111, JCM 14882 [[Tsukamurella spongiae]], NCTC 13230, NRRL B-24467 [[Tsukamurella spongiae]], T. pulmonis, Tsukamurella sp. K362, Tsukamurella spongiae, Tsukamurella spongiae Olson et al. 2007, strain K362 [[Tsukamurella spongiae]]
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