STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIT29777.1ABC-2 type transport system ATP-binding protein. (131 aa)    
Predicted Functional Partners:
SIS97409.1
ABC-2 type transport system permease protein.
 
 
 0.900
SIS63999.1
ABC-2 type transport system permease protein.
 
 
 0.877
SIS65494.1
Protein involved in gliding motility GldF.
 
 
 0.810
SIS77588.1
ABC-2 type transport system ATP-binding protein.
  
     0.715
SIT22169.1
ABC-2 type transport system ATP-binding protein.
  
    0.681
SIT29779.1
SusD family protein.
 
     0.626
SIT24709.1
ABC-2 type transport system ATP-binding protein.
 
     0.619
lolD
Lipoprotein-releasing system ATP-binding protein; Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner. Belongs to the ABC transporter superfamily. Lipoprotein translocase (TC 3.A.1.125) family.
 
   
 0.594
SIT29782.1
TonB-linked outer membrane protein, SusC/RagA family.
  
    0.553
SIT29774.1
Protein of unknown function.
       0.516
Your Current Organism:
Filimonas lacunae
NCBI taxonomy Id: 477680
Other names: Bacteroidetes bacterium YT0021, DSM 21054, F. lacunae, Filimonas lacunae Shiratori et al. 2009 emend. Leandro et al. 2013, NBRC 104114, strain YT0021, strain YT21
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.