STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIT31467.1Bacteroides conjugation system ATPase, TraG family. (818 aa)    
Predicted Functional Partners:
SIT31471.1
Protein of unknown function.
 
   
 0.954
SIT31469.1
Protein of unknown function.
 
     0.951
SIT31462.1
Hypothetical protein.
      0.874
SIT31445.1
Bacteroides conjugative transposon TraK protein.
 
  
 0.865
SIT31447.1
Bacteroides conjugative transposon TraJ protein.
 
   
 0.858
SIT31437.1
Bacteroides conjugative transposon TraN protein.
 
   
 0.849
SIT31484.1
TraM recognition site of TraD and TraG.
 
  
 0.849
SIT31440.1
Bacteroides conjugative transposon TraM protein.
 
   
 0.840
SIT31486.1
Relaxase/Mobilisation nuclease domain-containing protein.
 
   
 0.801
SIT31464.1
Hypothetical protein.
       0.678
Your Current Organism:
Filimonas lacunae
NCBI taxonomy Id: 477680
Other names: Bacteroidetes bacterium YT0021, DSM 21054, F. lacunae, Filimonas lacunae Shiratori et al. 2009 emend. Leandro et al. 2013, NBRC 104114, strain YT0021, strain YT21
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.