STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daud_0696PFAM: Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: tte:TTE1051 hypothetical protein. (208 aa)    
Predicted Functional Partners:
Daud_0692
PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: tte:TTE1047 STAS domain.
 
 
 0.975
Daud_0693
PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: tte:TTE1048 STAS domain.
 
 
 0.975
Daud_0698
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: mag:amb0729 predicted signal transduction protein.
 
  
 0.973
spoIIAB
Putative anti-sigma regulatory factor, serine/threonine protein kinase; Binds to sigma F and blocks its ability to form an RNA polymerase holoenzyme (E-sigma F). Phosphorylates SpoIIAA on a serine residue. This phosphorylation may enable SpoIIAA to act as an anti- anti-sigma factor that counteracts SpoIIAB and thus releases sigma F from inhibition.
 
 
 0.972
Daud_0697
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: tte:TTE1052 diguanylate cyclase/phosphodiesterase domain 1 (GGDEF).
 
  
 0.941
Daud_0771
Diguanylate cyclase with PAS/PAC sensor; KEGG: mta:Moth_2150 metal dependent phosphohydrolase; TIGRFAM: PAS sensor protein; diguanylate cyclase; metal dependent phophohydrolase; PFAM: GGDEF domain containing protein; GAF domain protein; metal-dependent phosphohydrolase, HD sub domain; PAS fold-4 domain protein; PAS fold domain protein; HDOD; SMART: PAS domain containing protein; metal-dependent phosphohydrolase, HD region.
 
  
 0.789
Daud_0538
Diguanylate cyclase with PAS/PAC sensor; KEGG: mta:Moth_2150 metal dependent phosphohydrolase; TIGRFAM: PAS sensor protein; diguanylate cyclase; metal dependent phophohydrolase; PFAM: GGDEF domain containing protein; GAF domain protein; metal-dependent phosphohydrolase, HD sub domain; PAS fold-4 domain protein; PAS fold domain protein; HDOD; SMART: PAS domain containing protein; metal-dependent phosphohydrolase, HD region.
 
  
 0.787
Daud_0689
Putative circadian clock protein, KaiC; PFAM: KaiC domain protein; SMART: AAA ATPase; KEGG: chy:CHY_0885 hypothetical protein.
 
     0.764
Daud_0690
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: gme:Gmet_1298 diguanylate cyclase (GGDEF domain).
 
  
 0.760
Daud_1737
PFAM: surface presentation of antigens (SPOA) protein; flagellar motor switch protein FliM; KEGG: chy:CHY_1019 flagellar motor switch protein FliM.
  
    0.747
Your Current Organism:
Desulforudis audaxviator
NCBI taxonomy Id: 477974
Other names: C. Desulforudis audaxviator MP104C, Candidatus Desulforudis audaxviator MP104C, Candidatus Desulforudis audaxviator str. MP104C, Candidatus Desulforudis audaxviator strain MP104C
Server load: low (40%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.