STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daud_1192PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: mta:Moth_2263 metal dependent phosphohydrolase. (364 aa)    
Predicted Functional Partners:
Daud_0697
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: tte:TTE1052 diguanylate cyclase/phosphodiesterase domain 1 (GGDEF).
 
   0.867
Daud_0690
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: gme:Gmet_1298 diguanylate cyclase (GGDEF domain).
 
   0.798
Daud_1844
Metal dependent phosphohydrolase; KEGG: swo:Swol_2130 response regulator receiver protein; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region.
  
     0.775
Daud_1193
PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: mta:Moth_2263 metal dependent phosphohydrolase.
 
    
0.727
Daud_0698
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: mag:amb0729 predicted signal transduction protein.
 
 
 0.707
Daud_2083
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; GAF domain protein; KEGG: tte:TTE2335 diguanylate cyclase/phosphodiesterase domain 1 (GGDEF).
 
 0.684
Daud_1194
Chorismate mutase; Catalyzes the Claisen rearrangement of chorismate to prephenate. Probably involved in the aromatic amino acid biosynthesis.
       0.638
Daud_1195
KEGG: chy:CHY_1935 hypothetical protein.
       0.598
trpA
Tryptophan synthase, alpha subunit; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family.
       0.461
trpB
Tryptophan synthase, beta subunit; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine.
       0.459
Your Current Organism:
Desulforudis audaxviator
NCBI taxonomy Id: 477974
Other names: C. Desulforudis audaxviator MP104C, Candidatus Desulforudis audaxviator MP104C, Candidatus Desulforudis audaxviator str. MP104C, Candidatus Desulforudis audaxviator strain MP104C
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