STRINGSTRING
rpmE protein (Desulforudis audaxviator) - STRING interaction network
"rpmE" - 50S ribosomal protein L31 in Desulforudis audaxviator
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpmE50S ribosomal protein L31; Binds the 23S rRNA (67 aa)    
Predicted Functional Partners:
rpsP
PFAM- ribosomal protein S16; KEGG- chy-CHY_1433 ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family (92 aa)
   
 
  0.999
rpmA
PFAM- ribosomal protein L27; KEGG- chy-CHY_0368 ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family (87 aa)
   
 
  0.999
rplM
50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly (145 aa)
   
 
  0.999
rpsJ
30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes (102 aa)
     
 
  0.999
rplQ
PFAM- ribosomal protein L17; KEGG- swo-Swol_2303 ribosomal protein L17 (112 aa)
   
 
  0.999
rpmJ
PFAM- ribosomal protein L36; KEGG- ssp-SSP0686 50S ribosomal protein L36; Belongs to the bacterial ribosomal protein bL36 family (37 aa)
   
 
  0.999
rpmC
PFAM- ribosomal protein L29; KEGG- tte-TTE2284 ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family (67 aa)
   
 
  0.999
rpmB
PFAM- ribosomal protein L28; KEGG- dsy-DSY2679 50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family (63 aa)
   
 
  0.999
rplX
50S ribosomal protein L24; One of two assembly initiator proteins, it binds directly to the 5’-end of the 23S rRNA, where it nucleates assembly of the 50S subunit (106 aa)
   
 
  0.999
rplP
50S ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs (143 aa)
   
 
  0.999
Your Current Organism:
Desulforudis audaxviator
NCBI taxonomy Id: 477974
Other names: C. Desulforudis audaxviator MP104C, Candidatus Desulforudis audaxviator MP104C, Candidatus Desulforudis audaxviator str. MP104C, Candidatus Desulforudis audaxviator strain MP104C, Desulforudis audaxviator
Server load: low (23%) [HD]