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PITG_05006 protein (Phytophthora infestans) - STRING interaction network
"PITG_05006" - U1 small nuclear ribonucleoprotein A in Phytophthora infestans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PITG_05006U1 small nuclear ribonucleoprotein A (233 aa)    
Predicted Functional Partners:
PITG_23192
Small nuclear ribonucleoprotein F, putative (98 aa)
     
  0.983
PITG_05666
Small nuclear ribonucleoprotein E (79 aa)
     
  0.982
PITG_15653
Small nuclear ribonucleoprotein G (64 aa)
     
  0.981
PITG_18752
Small nuclear ribonucleoprotein-associated protein, putative (216 aa)
     
  0.980
PITG_19646
Pre-mRNA-processing factor 19, putative (524 aa)
     
  0.978
PITG_01528
Cell division cycle 5-related protein, putative (761 aa)
     
  0.977
PITG_00117
Splicing factor 3A (493 aa)
     
  0.969
PITG_07306
U11/U12 small nuclear ribonucleoprotein 35 kDa protein, putative (204 aa)
     
  0.967
PITG_12844
Putative uncharacterized protein (195 aa)
     
  0.967
PITG_02736
U2 small nuclear ribonucleoprotein A’, putative (329 aa)
     
  0.967
Your Current Organism:
Phytophthora infestans
NCBI taxonomy Id: 4787
Other names: P. infestans, Phytophthora infestans, potato late blight, potato late blight agent, potato late blight fungus
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