STRINGSTRING
PITG_05259 protein (Phytophthora infestans) - STRING interaction network
"PITG_05259" - DNA excision repair protein ERCC-6 in Phytophthora infestans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PITG_05259DNA excision repair protein ERCC-6 (1052 aa)    
Predicted Functional Partners:
PITG_12304
TATA-box-binding protein, putative (163 aa)
       
  0.939
PITG_07312
TATA-box-binding protein (251 aa)
       
  0.939
PITG_06201
TATA-box-binding protein (220 aa)
       
  0.939
PITG_06663
Putative uncharacterized protein (103 aa)
       
 
  0.833
PITG_18027
Histone acetyltransferase, putative (873 aa)
     
  0.776
PITG_08587
Histone acetyltransferase, putative (1186 aa)
     
  0.776
PITG_21077
DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1858 aa)
     
  0.762
PITG_03500
Chromodomain-helicase-DNA-binding protein 1 (875 aa)
   
0.747
PITG_02286
Chromatin-remodeling complex ATPase chain, putative (1385 aa)
   
0.745
PITG_17273
Putative uncharacterized protein (1092 aa)
   
0.745
Your Current Organism:
Phytophthora infestans
NCBI taxonomy Id: 4787
Other names: P. infestans, Phytophthora infestans, potato late blight, potato late blight agent, potato late blight fungus
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