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PITG_11417 protein (Phytophthora infestans) - STRING interaction network
"PITG_11417" - U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein, putative in Phytophthora infestans
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PITG_11417U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein, putative (274 aa)    
Predicted Functional Partners:
PITG_03276
U4/U6.U5 tri-snRNP-associated protein, putative (493 aa)
     
  0.727
PITG_09604
Putative uncharacterized protein (775 aa)
     
    0.675
PITG_17072
U4/U6 small nuclear ribonucleoprotein Prp4, putative (525 aa)
     
    0.641
PITG_03645
WD domain-containing protein (434 aa)
     
    0.641
PITG_00797
WD domain-containing protein (501 aa)
     
    0.641
PITG_19064
Pre-mRNA-splicing factor ISY1 (210 aa)
     
 
    0.611
PITG_14885
DNA-directed RNA polymerase II 19 kDa polypeptide (177 aa)
     
 
    0.598
PITG_05666
Small nuclear ribonucleoprotein E (79 aa)
     
 
  0.550
PITG_08438
Serine/arginine repetitive matrix protein, putative (251 aa)
     
 
  0.536
PITG_13972
U6 snRNA-associated Sm-like protein LSm6, putative (83 aa)
     
 
  0.525
Your Current Organism:
Phytophthora infestans
NCBI taxonomy Id: 4787
Other names: P. infestans, Phytophthora infestans, potato late blight, potato late blight agent, potato late blight fungus
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