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PITG_13041 protein (Phytophthora infestans) - STRING interaction network
"PITG_13041" - RNA polymerase-associated protein RTF1 in Phytophthora infestans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PITG_13041RNA polymerase-associated protein RTF1 (760 aa)    
Predicted Functional Partners:
PITG_08452
Putative uncharacterized protein (466 aa)
     
  0.975
PITG_03348
RNA polymerase-associated protein CTR9 (1166 aa)
     
  0.971
PITG_03364
RNA polymerase II-associated factor 1 (509 aa)
     
  0.969
PITG_08366
Parafibromin-like protein (410 aa)
     
  0.965
PITG_08392
FACT complex subunit SPT16, putative (1077 aa)
     
  0.962
PITG_14260
FACT complex subunit SSRP1, putative (537 aa)
     
  0.961
PITG_05685
Transcription elongation factor SPT5, putative (1142 aa)
     
  0.959
PITG_00194
Casein kinase II subunit, putative (348 aa)
       
      0.884
PITG_21077
DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1858 aa)
       
  0.834
PITG_00982
Putative uncharacterized protein (1294 aa)
     
 
  0.780
Your Current Organism:
Phytophthora infestans
NCBI taxonomy Id: 4787
Other names: P. infestans, Phytophthora infestans, potato late blight, potato late blight agent, potato late blight fungus
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