STRINGSTRING
PITG_13114 protein (Phytophthora infestans) - STRING interaction network
"PITG_13114" - Elicitin-like protein in Phytophthora infestans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PITG_13114Elicitin-like protein (355 aa)    
Predicted Functional Partners:
PITG_00980
Nuclear cap-binding protein subunit, putative (892 aa)
     
  0.997
PITG_05126
Splicing factor 3A subunit, putative (244 aa)
     
  0.959
PITG_02482
ATP-dependent RNA helicase DHX8 (1158 aa)
     
  0.917
PITG_10871
U1 small nuclear ribonucleoprotein C, putative; Component of the U1 snRNP, which is essential for recognition of the pre-mRNA 5’ splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5’ splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5’ splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates E complex formation by stabilizing the base pairing of the 5’ end of the U1 snRNA and the 5’ splice-site region (138 aa)
     
  0.892
PITG_07306
U11/U12 small nuclear ribonucleoprotein 35 kDa protein, putative (204 aa)
     
  0.890
PITG_14284
Putative uncharacterized protein (1586 aa)
       
  0.872
PITG_07053
Putative uncharacterized protein (540 aa)
     
    0.855
PITG_00117
Splicing factor 3A (493 aa)
     
  0.852
PITG_05006
U1 small nuclear ribonucleoprotein A (233 aa)
     
  0.851
PITG_04538
Splicing factor 3 subunit, putative (628 aa)
     
  0.843
Your Current Organism:
Phytophthora infestans
NCBI taxonomy Id: 4787
Other names: P. infestans, Phytophthora infestans, potato late blight, potato late blight agent, potato late blight fungus
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