STRINGSTRING
PITG_13719 protein (Phytophthora infestans) - STRING interaction network
"PITG_13719" - DNA excision repair protein ERCC-1 in Phytophthora infestans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PITG_13719DNA excision repair protein ERCC-1 (308 aa)    
Predicted Functional Partners:
PITG_12229
DNA repair endonuclease XPF, putative (946 aa)
     
  0.971
PITG_16978
Crossover junction endonuclease MUS81-like protein (572 aa)
     
  0.955
PITG_02805
DNA mismatch repair protein Msh2, putative (816 aa)
     
  0.952
PITG_02753
DNA polymerase (1223 aa)
       
  0.881
PITG_17638
Putative uncharacterized protein (126 aa)
     
  0.848
PITG_03905
Putative uncharacterized protein (134 aa)
     
  0.848
PITG_03351
DNA mismatch repair protein Msh6, putative; Component of the post-replicative DNA mismatch repair system (MMR) (1245 aa)
       
  0.792
PITG_10592
DEAD/DEAH box RNA helicase, putative (829 aa)
       
  0.746
PITG_10457
RNA-dependent RNA Polymerase1 (RDR1) (2680 aa)
       
  0.746
PITG_06002
Mismatch repair endonuclease pms1, putative (686 aa)
     
  0.741
Your Current Organism:
Phytophthora infestans
NCBI taxonomy Id: 4787
Other names: P. infestans, Phytophthora infestans, potato late blight, potato late blight agent, potato late blight fungus
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