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PITG_13972 protein (Phytophthora infestans) - STRING interaction network
"PITG_13972" - U6 snRNA-associated Sm-like protein LSm6, putative in Phytophthora infestans
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PITG_13972U6 snRNA-associated Sm-like protein LSm6, putative (83 aa)    
Predicted Functional Partners:
PITG_09828
U6 snRNA-associated Sm-like protein LSm3, putative (92 aa)
   
  0.998
PITG_14575
U6 snRNA-associated Sm-like protein, putative (106 aa)
     
  0.997
PITG_16975
Putative uncharacterized protein (93 aa)
     
  0.997
PITG_08673
Putative uncharacterized protein (62 aa)
     
  0.997
PITG_15653
Small nuclear ribonucleoprotein G (64 aa)
     
  0.993
PITG_09653T0
U6 snRNA-associated Sm-like protein LSm4, putative (79 aa)
     
  0.992
PITG_05666
Small nuclear ribonucleoprotein E (79 aa)
     
  0.992
PITG_18752
Small nuclear ribonucleoprotein-associated protein, putative (216 aa)
     
  0.985
PITG_05680
Putative uncharacterized protein (150 aa)
     
  0.980
PITG_10969
Pre-mRNA-processing-splicing factor 8 (2320 aa)
     
  0.978
Your Current Organism:
Phytophthora infestans
NCBI taxonomy Id: 4787
Other names: P. infestans, Phytophthora infestans, potato late blight, potato late blight agent, potato late blight fungus
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