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PITG_13976 protein (Phytophthora infestans) - STRING interaction network
"PITG_13976" - DEAD/DEAH box RNA helicase, putative in Phytophthora infestans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PITG_13976DEAD/DEAH box RNA helicase, putative (456 aa)    
Predicted Functional Partners:
PITG_07775
Splicing factor 3B subunit, putative (235 aa)
     
  0.975
PITG_06171
Splicing factor 3B subunit 1 (1235 aa)
     
  0.975
PITG_15575
Splicing factor 3B subunit 4 (188 aa)
     
  0.953
PITG_07053
Putative uncharacterized protein (540 aa)
     
  0.947
PITG_08011
Pre-mRNA-splicing factor RSE1 (1197 aa)
     
  0.913
PITG_10282
Pre-mRNA branch site protein p14, putative (162 aa)
       
    0.911
PITG_19646
Pre-mRNA-processing factor 19, putative (524 aa)
     
  0.889
PITG_09401
Pre-mRNA-splicing factor ini1 (110 aa)
       
    0.888
PITG_03569
Putative uncharacterized protein (405 aa)
     
      0.881
PITG_00980
Nuclear cap-binding protein subunit, putative (892 aa)
     
  0.787
Your Current Organism:
Phytophthora infestans
NCBI taxonomy Id: 4787
Other names: P. infestans, Phytophthora infestans, potato late blight, potato late blight agent, potato late blight fungus
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