STRINGSTRING
PITG_20790 protein (Phytophthora infestans) - STRING interaction network
"PITG_20790" - DEAD/DEAH box RNA helicase, putative in Phytophthora infestans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PITG_20790DEAD/DEAH box RNA helicase, putative (565 aa)    
Predicted Functional Partners:
PITG_09555
Ubiquitin-ribosomal fusion protein, putative (128 aa)
     
 
  0.659
PITG_13437
Metalloprotease family M16C, putative (1048 aa)
     
      0.545
PITG_04712
Putative uncharacterized protein (1038 aa)
     
  0.491
PITG_03812
Putative uncharacterized protein (813 aa)
     
  0.491
PITG_00141
Putative uncharacterized protein (1981 aa)
       
  0.489
PITG_10193
Ubiquitin, putative (156 aa)
     
 
  0.481
PITG_18001
Ubiquitin, putative (175 aa)
     
 
  0.478
PITG_16311
PolyubiquitinUbiquitin (305 aa)
     
 
  0.478
PITG_08521
Ubiquitin family RING domain-containing protein (366 aa)
     
 
  0.478
PITG_08480
Ubiquitin, putative (657 aa)
     
 
  0.478
Your Current Organism:
Phytophthora infestans
NCBI taxonomy Id: 4787
Other names: P. infestans, Phytophthora infestans, potato late blight, potato late blight agent, potato late blight fungus
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