STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ88892.1Por secretion system C-terminal sorting domain-containing protein. (1318 aa)    
Predicted Functional Partners:
SEQ64039.1
Hpt domain-containing protein.
   
 0.842
SER13739.1
PAS domain S-box-containing protein.
    
 0.833
SEP79285.1
PAS domain S-box-containing protein.
   
 0.828
SER23613.1
PAS domain S-box-containing protein.
   
 0.828
SEQ61649.1
Two component regulator propeller.
    
 0.811
SEQ70462.1
Hypothetical protein.
    
 0.711
SEQ26657.1
Signal transduction histidine kinase.
    
 0.703
ribB
3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
  
 
  0.679
SEP67908.1
GTP cyclohydrolase II.
  
 
  0.679
ribA
GTP cyclohydrolase II; Catalyzes the conversion of GTP to 2,5-diamino-6- ribosylamino-4(3H)-pyrimidinone 5'-phosphate (DARP), formate and pyrophosphate; Belongs to the GTP cyclohydrolase II family.
  
 
  0.679
Your Current Organism:
Lewinella agarilytica
NCBI taxonomy Id: 478744
Other names: DSM 24740, JBRI 2009, JCM 14216, KCTC 12774, L. agarilytica, Lewinella agarilytica Lee 2007, strain SST-19
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