STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AV274_5464Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family. (323 aa)    
Predicted Functional Partners:
AV274_2633
RAD50, DNA repair protein.
    
 0.746
AV274_5172
MRE11, DNA repair exonuclease.
    
 0.712
AV274_2665
Uncharacterized protein.
    
 0.643
AV274_5040
Uncharacterized protein.
     
 0.637
AV274_1366
DNA replication ATP-dependent helicase.
    
 0.634
AV274_2883
Replication factor C subunit 3.
     
 0.632
AV274_6571
Fructokinase.
    
  0.631
AV274_0322
H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs.
     
 0.626
AV274_4789
DNA polymerase.
    
  0.622
AV274_4291
Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.
     
 0.621
Your Current Organism:
Blastocystis sp. ATCC 50177Nand
NCBI taxonomy Id: 478820
Other names: B. sp. ATCC 50177/Nand II, Blastocystis sp. ATCC 50177, Blastocystis sp. ATCC 50177/Nand II, Blastocystis sp. Nand II, Blastocystis sp. NandII, Blastocystis sp. subtype 1 NandII
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.