STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Namu_0321Transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; metal-dependent phosphohydrolase HD sub domain; SMART: regulatory protein LuxR; KEGG: mlo:mll1989 hypothetical protein. (524 aa)    
Predicted Functional Partners:
Namu_1007
Diguanylate cyclase/phosphodiesterase with GAF sensor; KEGG: cja:CJA_1331 sensory box/GGDEF domain/EAL domain protein; TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; GGDEF domain containing protein; GAF domain protein; SMART: EAL domain protein; GGDEF domain containing protein; GAF domain protein.
 
 
 0.906
Namu_0203
Diguanylate cyclase/phosphodiesterase with GAF sensor; KEGG: mca:MCA1237 sensory box protein; TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; GGDEF domain containing protein; GAF domain protein; SMART: EAL domain protein; GGDEF domain containing protein; GAF domain protein.
 
 
 0.749
Namu_5244
KEGG: bph:Bphy_0391 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; GGDEF domain containing protein; GAF domain protein; SMART: EAL domain protein; GGDEF domain containing protein; GAF domain protein.
 
 
 0.747
Namu_5214
KEGG: gme:Gmet_3085 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; GGDEF domain containing protein; PAS fold domain protein; PAS fold-4 domain protein; SMART: EAL domain protein; GGDEF domain containing protein; PAC repeat-containing protein; PAS domain containing protein.
 
  
 0.676
Namu_4044
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); KEGG: azo:azo1278 EAL/GGDEF/PAS/PAC-domain- containing signalling protein; TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; PAS fold-3 domain protein; GGDEF domain containing protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: EAL domain protein; GGDEF domain containing protein; PAC repeat-containing protein; PAS domain containing protein.
 
  
 0.666
Namu_0322
KEGG: oca:OCAR_7467 hypothetical protein.
 
     0.633
Namu_2087
Putative PAS/PAC sensor protein; PFAM: Stage II sporulation E family protein; ATP- binding region ATPase domain protein; PAS fold-4 domain protein; Sulfate transporter/antisigma-factor antagonist STAS; SMART: protein phosphatase 2C domain protein; KEGG: bgl:bglu_2g22590 putative PAS/PAC sensor protein.
  
 
 0.614
Namu_3685
KEGG: bpy:Bphyt_6387 hypothetical protein.
  
     0.600
Namu_2015
KEGG: cak:Caul_3769 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: histidine kinase A domain protein; GAF domain protein; PAS fold-4 domain protein; ATP-binding region ATPase domain protein; SMART: histidine kinase A domain protein; GAF domain protein; PAS domain containing protein; ATP-binding region ATPase domain protein.
  
 
 0.558
Namu_5011
KEGG: dvm:DvMF_1014 diguanylate cyclase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein.
 
 
 0.536
Your Current Organism:
Nakamurella multipartita
NCBI taxonomy Id: 479431
Other names: N. multipartita DSM 44233, Nakamurella multipartita DSM 44233, Nakamurella multipartita str. DSM 44233, Nakamurella multipartita strain DSM 44233
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