STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xylAKEGG: aba:Acid345_0903 xylose isomerase; Belongs to the xylose isomerase family. (383 aa)    
Predicted Functional Partners:
xylB
Xylulokinase; KEGG: ppw:PputW619_2036 xylulokinase.
 
 
 0.999
Sros_3496
KEGG: csa:Csal_0643 mannitol dehydrogenase-like protein.
    
 0.924
Sros_2313
KEGG: aca:ACP_1928 sorbitol oxidase.
 
  
  0.922
Sros_3492
KEGG: hypothetical protein.
     
 0.913
Sros_5737
KEGG: bja:bll5566 putative sorbitol dehydrogenase.
     
 0.911
Sros_1891
KEGG: bid:Bind_2866 ribokinase-like domain- containing protein; Belongs to the carbohydrate kinase PfkB family.
    
 0.908
araA
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
 
   
 0.847
Sros_3372
Glucokinase; KEGG: sde:Sde_1018 glucokinase; Belongs to the bacterial glucokinase family.
     
 0.824
Sros_2476
KEGG: ara:Arad_9637 transcriptional regulator protein.
    
 0.816
Sros_2701
KEGG: sfu:Sfum_1953 ROK family protein.
    
 0.816
Your Current Organism:
Streptosporangium roseum
NCBI taxonomy Id: 479432
Other names: S. roseum DSM 43021, Streptosporangium roseum DSM 43021, Streptosporangium roseum str. DSM 43021, Streptosporangium roseum strain DSM 43021
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