STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sros_1401KEGG: cvi:CV_3016 ribose ABC transporter, substrate binding protein. (315 aa)    
Predicted Functional Partners:
Sros_1400
KEGG: cvi:CV_3017 D-ribose transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.
 0.999
Sros_8211
KEGG: bph:Bphy_4300 monosaccharide-transporting ATPase; Belongs to the binding-protein-dependent transport system permease family.
 0.993
rbsA
ABC transporter ATP-binding protein; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.
 0.992
Sros_8258
KEGG: bsu:BSU35950 ribose ABC transporter (permease); Belongs to the binding-protein-dependent transport system permease family.
 0.990
Sros_7475
KEGG: dac:Daci_4580 monosaccharide-transporting ATPase; Belongs to the binding-protein-dependent transport system permease family.
 
 0.987
rbsD
RbsD; Catalyzes the interconversion of beta-pyran and beta-furan forms of D-ribose.
 
  
 0.986
Sros_6220
KEGG: aav:Aave_2249 inner membrane ABC transporter permease protein YjfF; Belongs to the binding-protein-dependent transport system permease family.
 
 0.983
Sros_2414
KEGG: mlo:mll4201 ribose ABC transporter (permease); Belongs to the binding-protein-dependent transport system permease family.
 
 0.973
Sros_2415
KEGG: pna:Pnap_4052 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
 0.973
Sros_2265
KEGG: sus:Acid_0531 histidine kinase.
  
 
 0.971
Your Current Organism:
Streptosporangium roseum
NCBI taxonomy Id: 479432
Other names: S. roseum DSM 43021, Streptosporangium roseum DSM 43021, Streptosporangium roseum str. DSM 43021, Streptosporangium roseum strain DSM 43021
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