STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sros_2035KEGG: ppd:Ppro_3661 transposase Tn3 family protein. (659 aa)    
Predicted Functional Partners:
Sros_0217
Hypothetical protein; KEGG: ara:Arad_15011 transposase.
     0.957
Sros_4727
Site-specific recombinase DNA invertase Pin; KEGG: vei:Veis_5037 resolvase domain-containing protein.
 
   
 0.511
Sros_2036
ATPase-like protein; KEGG: bbt:BBta_1892 transcriptional regulator.
       0.507
Sros_2037
KEGG: bph:Bphy_4577 cyclic nucleotide-binding protein.
       0.434
Sros_2039
KEGG: baa:BA_2234 helix-turn-helix family DUF118.
 
     0.401
Your Current Organism:
Streptosporangium roseum
NCBI taxonomy Id: 479432
Other names: S. roseum DSM 43021, Streptosporangium roseum DSM 43021, Streptosporangium roseum str. DSM 43021, Streptosporangium roseum strain DSM 43021
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.