STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sros_3276Lyase-like protein; KEGG: bbr:BB0423 putative hydrolase. (377 aa)    
Predicted Functional Partners:
Sros_3285
Hypothetical protein; KEGG: pen:PSEEN0788 dihydropteroate synthase.
  
     0.662
Sros_3162
Hypothetical protein.
  
     0.528
Sros_3286
KEGG: hypothetical protein.
  
     0.505
Sros_0557
KEGG: cak:Caul_4310 hypothetical protein.
  
     0.494
Sros_5305
Hypothetical protein.
  
     0.494
Sros_1153
KEGG: noc:Noc_0762 hypothetical protein.
  
     0.482
rpoA
RNA polymerase, alpha chain, N terminal domain protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
      
 0.467
Sros_6501
KEGG: mpt:Mpe_A0601 putative membrane protein involved in the export of O-antigen and teichoic acid.
  
     0.463
Sros_4502
KEGG: bur:Bcep18194_C7464 TetR family transcriptional regulator.
  
     0.451
Sros_5378
KEGG: bvi:Bcep1808_3633 aminoglycoside/hydroxyurea antibiotic resistance kinase.
  
   
 0.427
Your Current Organism:
Streptosporangium roseum
NCBI taxonomy Id: 479432
Other names: S. roseum DSM 43021, Streptosporangium roseum DSM 43021, Streptosporangium roseum str. DSM 43021, Streptosporangium roseum strain DSM 43021
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.