STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sros_4064KEGG: pol:Bpro_2054 NUDIX hydrolase. (206 aa)    
Predicted Functional Partners:
Sros_0470
Hypothetical protein; KEGG: mes:Meso_2177 NUDIX hydrolase.
 
  
 0.563
Sros_8362
NAD(+) diphosphatase; KEGG: sfu:Sfum_1412 NUDIX hydrolase.
 
   
 0.510
Sros_4065
KEGG: rce:RC1_2751 acetyltransferase, GNAT family protein.
  
    0.447
Sros_4063
KEGG: ank:AnaeK_2263 1-acyl-sn-glycerol-3-phosphate acyltransferase.
       0.405
Sros_3968
KEGG: pla:Plav_3076 aminoglycoside phosphotransferase.
 
     0.402
Your Current Organism:
Streptosporangium roseum
NCBI taxonomy Id: 479432
Other names: S. roseum DSM 43021, Streptosporangium roseum DSM 43021, Streptosporangium roseum str. DSM 43021, Streptosporangium roseum strain DSM 43021
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.