STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sros_4235Transcriptional regulator, PadR family; KEGG: bar:GBAA2812 hypothetical protein. (111 aa)    
Predicted Functional Partners:
Sros_4234
NADPH:quinone reductase and related Zn-dependent oxidoreductase-like protein; KEGG: scl:sce1535 alcohol dehydrogenase.
 
     0.867
Sros_5392
KEGG: bar:GBAA2811 hypothetical protein.
 
     0.789
Sros_3281
KEGG: sus:Acid_7112 PadR family transcriptional regulator.
  
     0.637
Sros_4588
KEGG: gdj:Gdia_0204 transcriptional regulator, PadR- like family.
  
     0.623
Sros_3780
Transcriptional regulator, PadR family; KEGG: bar:GBAA3495 hypothetical protein.
  
     0.602
Sros_4233
Hypothetical protein; KEGG: mag:amb4349 major facilitator superfamily permease.
       0.563
Sros_6088
KEGG: sus:Acid_3839 PadR family transcriptional regulator.
  
     0.497
Sros_4236
Hypothetical protein; KEGG: potassium efflux antiporter.
       0.439
Sros_4237
KEGG: pzu:PHZ_c3472 transcriptional regulator, Cro/CI family.
       0.439
Sros_8856
Transcriptional regulator, PadR family; KEGG: bar:GBAA3495 hypothetical protein.
  
     0.438
Your Current Organism:
Streptosporangium roseum
NCBI taxonomy Id: 479432
Other names: S. roseum DSM 43021, Streptosporangium roseum DSM 43021, Streptosporangium roseum str. DSM 43021, Streptosporangium roseum strain DSM 43021
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.