STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sros_5916KEGG: rpc:RPC_4133 HAD family hydrolase. (218 aa)    
Predicted Functional Partners:
Sros_5892
tRNA (adenine-N(1)-)-methyltransferase; Catalyzes the S-adenosyl-L-methionine-dependent formation of N(1)-methyladenine at position 58 (m1A58) in tRNA.
      0.911
Sros_5052
KEGG: hypothetical protein.
      0.887
Sros_4837
KEGG: sat:SYN_00043 gluconate kinase.
  
    0.787
Sros_5917
Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
  
    0.758
hisE
Phosphoribosyl-ATP pyrophosphohydrolase-like protein; KEGG: smt:Smal_1763 phosphoribosyl-ATP diphosphatase.
      0.610
Sros_5918
KEGG: sme:SMa1100 hypothetical protein.
  
    0.518
Sros_5919
KEGG: sfu:Sfum_3209 hypothetical protein.
       0.468
Sros_5915
KEGG: mrd:Mrad2831_4799 cellulose synthase catalytic subunit (UDP-forming).
       0.462
Your Current Organism:
Streptosporangium roseum
NCBI taxonomy Id: 479432
Other names: S. roseum DSM 43021, Streptosporangium roseum DSM 43021, Streptosporangium roseum str. DSM 43021, Streptosporangium roseum strain DSM 43021
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.