STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sros_6223KEGG: rpi:Rpic_4095 periplasmic binding protein/LacI transcriptional regulator. (325 aa)    
Predicted Functional Partners:
Sros_6220
KEGG: aav:Aave_2249 inner membrane ABC transporter permease protein YjfF; Belongs to the binding-protein-dependent transport system permease family.
 0.993
Sros_6222
KEGG: bja:blr3201 sugar ABC transporter ATP-binding protein.
 0.990
Sros_6221
KEGG: rpi:Rpic_4097 monosaccharide-transporting ATPase; Belongs to the binding-protein-dependent transport system permease family.
 0.989
Sros_2265
KEGG: sus:Acid_0531 histidine kinase.
  
 
 0.981
Sros_1400
KEGG: cvi:CV_3017 D-ribose transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
 0.964
Sros_0401
KEGG: pzu:PHZ_c2079 sensor histidine kinase/response regulator.
  
 
 0.944
Sros_1943
KEGG: afw:Anae109_0540 GAF sensor hybrid histidine kinase.
   
 
 0.944
Sros_7475
KEGG: dac:Daci_4580 monosaccharide-transporting ATPase; Belongs to the binding-protein-dependent transport system permease family.
 
 0.944
Sros_7544
Signal transduction histidine kinase-like protein; KEGG: bra:BRADO5752 sensor histidine kinase.
  
 
 0.918
Sros_8258
KEGG: bsu:BSU35950 ribose ABC transporter (permease); Belongs to the binding-protein-dependent transport system permease family.
 
 0.883
Your Current Organism:
Streptosporangium roseum
NCBI taxonomy Id: 479432
Other names: S. roseum DSM 43021, Streptosporangium roseum DSM 43021, Streptosporangium roseum str. DSM 43021, Streptosporangium roseum strain DSM 43021
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