STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sros_6937KEGG: eba:ebA3742 propionyl-CoA carboxylase beta subunit. (559 aa)    
Predicted Functional Partners:
Sros_8318
KEGG: bha:BH1132 acetyl-CoA carboxylase biotin carboxylase subunit.
 
 0.968
Sros_1299
KEGG: dac:Daci_5726 carbamoyl-phosphate synthase L chain ATP-binding.
 
 0.966
Sros_3798
KEGG: dac:Daci_5726 carbamoyl-phosphate synthase L chain ATP-binding.
 
 0.966
Sros_6412
KEGG: rru:Rru_A1941 3-methylcrotonoyl-CoA carboxylase, alpha subunit.
 
 0.956
Sros_6358
KEGG: xau:Xaut_1855 carbamoyl-phosphate synthase L chain ATP-binding.
 
 0.952
Sros_4193
KEGG: gdj:Gdia_2052 acetyl-CoA carboxylase, biotin carboxylase.
  
 
 0.911
Sros_1696
KEGG: gbm:Gbem_0558 methylmalonyl-CoA epimerase.
 
 
 0.870
Sros_1326
KEGG: afw:Anae109_1479 biotin--acetyl-CoA- carboxylase ligase.
 
 
 0.830
Sros_5380
KEGG: aba:Acid345_0466 carbamoyl-phosphate synthase L chain, ATP-binding.
  
0.788
Sros_8317
KEGG: bar:GBAA2549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit.
 
 0.708
Your Current Organism:
Streptosporangium roseum
NCBI taxonomy Id: 479432
Other names: S. roseum DSM 43021, Streptosporangium roseum DSM 43021, Streptosporangium roseum str. DSM 43021, Streptosporangium roseum strain DSM 43021
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.