STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sros_7924KEGG: cvi:CV_3731 MFS family transporter. (404 aa)    
Predicted Functional Partners:
Sros_7923
KEGG: rce:RC1_0289 glycerophosphoryl diester phosphodiesterase.
       0.768
Sros_7087
KEGG: sun:SUN_0122 hypothetical protein; Belongs to the UPF0246 family.
  
    0.744
Sros_7925
Putative transcriptional regulator, XRE family; KEGG: rso:RSc1159 putative transcription regulator protein.
     
 0.566
Sros_7927
KEGG: bur:Bcep18194_B2530 major facilitator transporter.
 
     0.532
Sros_7926
KEGG: bur:Bcep18194_B2548 FAD dependent oxidoreductase.
       0.411
Your Current Organism:
Streptosporangium roseum
NCBI taxonomy Id: 479432
Other names: S. roseum DSM 43021, Streptosporangium roseum DSM 43021, Streptosporangium roseum str. DSM 43021, Streptosporangium roseum strain DSM 43021
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.