STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_0140PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: sgr:SGR_4813 putative oxidoreductase. (386 aa)    
Predicted Functional Partners:
Caci_0139
KEGG: sco:SCO2751 hypothetical protein.
 
  
 0.949
Caci_0137
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: tfu:Tfu_1719 hypothetical protein.
 
  
 0.917
Caci_0141
PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI; KEGG: tfu:Tfu_1710 LacI family transcription regulator.
 
     0.642
Caci_4491
PFAM: thiamine pyrophosphate protein central region; thiamine pyrophosphate protein domain protein TPP- binding; thiamine pyrophosphate protein TPP binding domain protein; KEGG: ace:Acel_1800 thiamine pyrophosphate binding domain-containing protein; Belongs to the TPP enzyme family.
  
  
 0.616
Caci_1724
PFAM: Myo-inositol catabolism IolB domain protein; KEGG: kra:Krad_4057 myo-inositol catabolism IolB domain-containing protein.
  
  
 0.601
Caci_3810
PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: sgr:SGR_2768 2-hydroxyacid family dehydrogenase.
 
   
 0.594
Caci_0127
PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: sma:SAV_2089 2-hydroxyacid dehydrogenase.
 
   
 0.588
Caci_1602
PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; KEGG: sma:SAV_2089 2-hydroxyacid dehydrogenase.
 
   
 0.586
Caci_6721
PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; KEGG: atc:AGR_L_3399 hypothetical protein.
 
   
 0.574
Caci_2683
PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; KEGG: sgr:SGR_2768 2-hydroxyacid family dehydrogenase.
 
   
 0.545
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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