STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_0342KEGG: sma:SAV_4147 hypothetical protein. (522 aa)    
Predicted Functional Partners:
Caci_5077
KEGG: ace:Acel_1933 hypothetical protein.
     0.974
Caci_0343
KEGG: sgr:SGR_3221 hypothetical protein.
 
     0.727
Caci_8500
PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; polysaccharide biosynthesis protein CapD; dTDP-4- dehydrorhamnose reductase; short-chain dehydrogenase/reductase SDR; NmrA family protein; KEGG: aau:AAur_2151 putative UDP-glucose 4- epimerase.
 
   0.709
Caci_8501
PFAM: oxidoreductase domain protein; Semialdehyde dehydrogenase NAD - binding; Oxidoreductase domain; KEGG: ace:Acel_1937 oxidoreductase domain- containing protein.
  
    0.634
Caci_8491
PFAM: O-antigen polymerase; KEGG: art:Arth_4126 O-antigen polymerase.
 
     0.583
Caci_8510
PFAM: glycosyl transferase family 2; KEGG: fre:Franean1_6545 glycosyl transferase family protein.
 
     0.527
Caci_8492
PFAM: polysaccharide biosynthesis protein; KEGG: art:Arth_4055 polysaccharide biosynthesis protein.
 
     0.454
Caci_0344
KEGG: sco:SCO3902 integral membrane protein.
       0.412
Caci_7845
PFAM: phosphoesterase PA-phosphatase related; KEGG: det:DET1390 PAP2 family protein.
 
     0.408
Caci_8511
PFAM: glycosyl transferase group 1; KEGG: sco:SCO0383 hypothetical protein.
  
    0.402
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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