STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_2146Putative RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: rha:RHA1_ro03838 sigma factor, includes region 2. (434 aa)    
Predicted Functional Partners:
Caci_2144
PFAM: YCII-related; KEGG: nfa:nfa38190 hypothetical protein.
     0.895
Caci_8235
PFAM: YCII-related; KEGG: pmy:Pmen_3123 DGPFAETKE family protein.
 
     0.779
Caci_0561
PFAM: YCII-related; KEGG: kra:Krad_2755 DGPFAETKE family protein.
 
     0.778
Caci_8876
PFAM: YCII-related; KEGG: saq:Sare_0955 DGPFAETKE family protein.
 
     0.774
Caci_8665
PFAM: YCII-related; KEGG: fre:Franean1_6623 DGPFAETKE family protein.
 
     0.772
Caci_4227
PFAM: YCII-related; KEGG: stp:Strop_4218 DGPFAETKE family protein.
 
     0.770
Caci_4343
PFAM: YCII-related; KEGG: stp:Strop_2715 DGPFAETKE family protein.
 
     0.729
Caci_4577
PFAM: YCII-related; KEGG: art:Arth_3350 DGPFAETKE family protein.
     0.601
Caci_3136
PFAM: YCII-related; KEGG: nca:Noca_0396 DGPFAETKE family protein.
 
     0.435
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.