STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_2220PFAM: peptidase S1 and S6 chymotrypsin/Hap; SMART: peptidase S1 and S6 chymotrypsin/Hap; KEGG: sma:SAV_2034 trypsin-like protease. (307 aa)    
Predicted Functional Partners:
Caci_2672
KEGG: sco:SCO4821 hypothetical protein.
    
 0.831
Caci_0104
PFAM: proteinase inhibitor I4 serpin; SMART: proteinase inhibitor I4 serpin; KEGG: scl:sce4096 secreted serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member; Belongs to the serpin family.
 
 
 0.816
Caci_4979
PFAM: coagulation factor 5/8 type domain protein; KEGG: sco:SCO0335 secreted protein.
   
 
 0.654
Caci_2331
KEGG: bre:BRE_469 nucleoside-diphosphate kinase; PFAM: nucleoside diphosphate kinase; SMART: nucleoside diphosphate kinase; Belongs to the NDK family.
    
 
 0.605
Caci_2219
PFAM: Chorismate binding-like; KEGG: sco:SCO1547 anthranilate synthase.
       0.519
Caci_2218
PFAM: aminotransferase class IV; KEGG: sma:SAV_6804 D-alanine aminotransferase.
   
   0.515
Caci_6422
PFAM: NUDIX hydrolase; KEGG: saq:Sare_1221 NUDIX hydrolase.
  
     0.498
Caci_8473
PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: stp:Strop_1437 peptidase S8 and S53, subtilisin, kexin, sedolisin.
 
 0.494
Caci_7574
SMART: Leucine-rich repeat, ribonuclease inhibitor subtype; KEGG: hypothetical protein.
  
 0.489
Caci_4832
PFAM: Transketolase central region; Transketolase domain protein; KEGG: fra:Francci3_1278 transketolase.
  
   0.472
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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