STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_2273PFAM: Enoyl-CoA hydratase/isomerase; KEGG: sma:SAV_6428 enoyl-CoA hydratase/isomerase; Belongs to the enoyl-CoA hydratase/isomerase family. (313 aa)    
Predicted Functional Partners:
Caci_4117
GAF sensor hybrid histidine kinase; KEGG: sma:SAV_1085 two-component system sensor kinase; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; GAF domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; GAF domain protein; histidine kinase HAMP region domain protein.
  
 
 0.880
Caci_3328
GAF sensor hybrid histidine kinase; KEGG: sma:SAV_1085 two-component system sensor kinase; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; GAF domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; GAF domain protein; histidine kinase HAMP region domain protein.
  
 
 0.879
Caci_0144
GAF sensor hybrid histidine kinase; KEGG: sgr:SGR_1773 putative two-component system sensor kinase; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; GAF domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; GAF domain protein; histidine kinase HAMP region domain protein.
   
 
 0.877
Caci_2596
PFAM: Enoyl-CoA hydratase/isomerase; KEGG: bte:BTH_II1669 polyketide biosynthesis enoyl- CoA hydratase.
  
     0.713
Caci_2272
KEGG: sco:SCO1839 transcriptional regulator.
       0.595
Caci_3091
KEGG: sgr:SGR_6834 putative nonspecific lipid- transfer protein.
  
 0.590
rpmG
TIGRFAM: ribosomal protein L33; PFAM: ribosomal protein L33; KEGG: sgr:SGR_2884 putative 50S ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.
    
 
 0.563
rplM
Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
 
   0.560
Caci_1224
PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; dihydrodipicolinate reductase; 3-hydroxyacyl-CoA dehydrogenase domain protein; KEGG: sco:SCO5385 3-hydroxybutyryl-CoA dehydrogenase.
 
 0.558
rpsI
PFAM: ribosomal protein S9; KEGG: rsa:RSal33209_1736 SSU ribosomal protein S9P; Belongs to the universal ribosomal protein uS9 family.
   
 
 0.555
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.