STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_3219KEGG: mxa:MXAN_6381 hypothetical protein. (683 aa)    
Predicted Functional Partners:
Caci_3218
KEGG: sen:SACE_7282 secreted hydrolase.
 
   
 0.859
Caci_3220
Hypothetical protein.
  
    0.624
Caci_3524
KEGG: sgr:SGR_597 hypothetical protein.
 
     0.594
Caci_4396
KEGG: sco:SCO4260 hypothetical protein.
  
     0.591
Caci_3217
Transcriptional regulator, CdaR; KEGG: sen:SACE_5329 putative transcriptional regulator.
       0.589
Caci_3699
Hypothetical protein; KEGG: fre:Franean1_3837 transposase IS4 family protein.
  
     0.583
Caci_3120
PFAM: protein of unknown function DUF35; KEGG: mgi:Mflv_3567 hypothetical protein.
  
     0.578
Caci_8742
PFAM: isochorismatase hydrolase; KEGG: mav:MAV_1602 isochorismatase family protein.
  
    0.536
Caci_4290
PFAM: condensation domain protein; KEGG: sgr:SGR_5180 hypothetical protein.
  
     0.512
Caci_2742
PFAM: condensation domain protein; KEGG: sgr:SGR_5180 hypothetical protein.
  
     0.506
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.