STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_3278PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: sen:SACE_3735 alcohol dehydrogenase, zinc- binding. (331 aa)    
Predicted Functional Partners:
Caci_7575
PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: sma:SAV_2980 dehydrogenase.
  
     0.753
Caci_5017
PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: fra:Francci3_2731 alcohol dehydrogenase GroES- like protein.
  
     0.737
Caci_6231
PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: cmi:CMM_0578 putative quinone reductase.
  
     0.727
Caci_5453
PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: cmi:CMM_0578 putative quinone reductase.
  
     0.692
Caci_3279
PFAM: regulatory protein TetR; KEGG: lsp:Bsph_2437 TetR family transcriptional regulator.
       0.531
Caci_3277
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; sigma-70 region 4 domain protein; KEGG: afw:Anae109_3622 ECF subfamily RNA polymerase sigma-24 factor.
       0.506
Caci_1603
PFAM: Alcohol dehydrogenase zinc-binding domain protein; KEGG: sgr:SGR_5290 putative oxidoreductase.
 
  
 0.505
Caci_1158
PFAM: Alcohol dehydrogenase zinc-binding domain protein; KEGG: nfa:nfa52670 putative dehydrogenase.
 
  
 0.450
Caci_3280
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: sma:SAV_1851 dehydrogenase.
       0.447
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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