STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_3280PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: sma:SAV_1851 dehydrogenase. (232 aa)    
Predicted Functional Partners:
Caci_2287
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: sma:SAV_6442 hypothetical protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
     0.747
Caci_0074
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: ank:AnaeK_2958 short-chain dehydrogenase/reductase SDR.
 
    0.739
Caci_3565
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: sen:SACE_4949 short-chain dehydrogenase/reductase SDR.
 
    0.738
Caci_4469
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: sco:SCO2490 dehydrogenase (secreted protein).
 
    0.730
Caci_8773
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: sgr:SGR_4254 putative short chain dehydrogenase.
 
    0.728
Caci_5227
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: sal:Sala_0877 short-chain dehydrogenase/reductase SDR.
 
    0.695
Caci_8162
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: fre:Franean1_6238 short-chain dehydrogenase/reductase SDR.
 
    0.692
Caci_2182
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: saq:Sare_2205 short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
     0.637
Caci_5565
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: sen:SACE_2515 short-chain dehydrogenase/reductase SDR.
 
    0.636
Caci_2720
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: sen:SACE_5381 putative 3-oxoacyl-[acyl- carrier protein] reductase.
 
    0.633
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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