STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_3684PFAM: aldo/keto reductase; KEGG: bid:Bind_2612 aldo/keto reductase. (317 aa)    
Predicted Functional Partners:
Caci_5354
PFAM: aldo/keto reductase; KEGG: tfu:Tfu_1385 putative oxidoreductase.
  
     0.767
Caci_1160
PFAM: aldo/keto reductase; KEGG: mab:MAB_1528c oxidoreductase.
 
 
 0.554
Caci_5118
PFAM: aldo/keto reductase; KEGG: sco:SCO0429 oxidoreductase.
  
     0.540
Caci_3682
SMART: helix-turn-helix domain protein; KEGG: aau:AAur_2039 putative transcriptional regulator.
       0.529
Caci_1081
PFAM: aldo/keto reductase; KEGG: saq:Sare_1764 aldo/keto reductase.
  
     0.442
Caci_3681
Transcriptional regulator, GntR family with aminotransferase domain; PFAM: regulatory protein GntR HTH; aminotransferase class I and II; SMART: regulatory protein GntR HTH; KEGG: sgr:SGR_6261 transcriptional regulator.
       0.441
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.