STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_3685KEGG: mgi:Mflv_0993 hypothetical protein. (420 aa)    
Predicted Functional Partners:
Caci_3686
PFAM: glycosyl transferase family 2; KEGG: sen:SACE_6097 putative glycosyl transferase.
 
     0.576
Caci_1324
PFAM: protein of unknown function UPF0099; KEGG: sco:SCO6046 hypothetical protein.
  
     0.565
Caci_0055
PFAM: TrkA-N domain protein; Ion transport 2 domain protein; KEGG: sma:SAV_4367 hypothetical protein.
  
     0.551
Caci_1912
TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator; KEGG: mab:MAB_0560 hypothetical protein.
  
     0.547
Caci_4607
KEGG: sma:SAV_6169 hypothetical protein.
  
     0.503
Caci_6077
KEGG: sma:SAV_6064 hypothetical protein.
  
     0.495
Caci_7119
TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator; KEGG: mav:MAV_0673 cell envelope-related function transcriptional attenuator domain protein.
  
     0.495
Caci_8771
TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator; KEGG: mab:MAB_0560 hypothetical protein.
  
     0.464
Caci_3150
PFAM: protein of unknown function DUF690; KEGG: saq:Sare_0941 hypothetical protein.
  
 
   0.430
Caci_0344
KEGG: sco:SCO3902 integral membrane protein.
 
     0.425
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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