STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_3688Transcriptional regulator, SARP family; PFAM: transcriptional activator domain; transcriptional regulator domain protein; KEGG: sgr:SGR_4408 putative AfsR-like transcriptional regulator. (348 aa)    
Predicted Functional Partners:
Caci_3690
PFAM: protein of unknown function DUF181; KEGG: sgr:SGR_4410 hypothetical protein.
 
     0.875
Caci_1985
PFAM: NB-ARC domain protein; SMART: AAA ATPase; Tetratricopeptide domain protein; KEGG: sen:SACE_0488 SARP family transcriptional regulator.
 
    0.869
Caci_3692
PFAM: Lantibiotic dehydratase domain protein; KEGG: sgr:SGR_4412 hypothetical protein.
 
     0.865
Caci_3942
PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: fre:Franean1_3441 TPR repeat-containing protein.
     0.852
Caci_3744
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; TPR repeat- containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: helix-turn-helix domain protein; Tetratricopeptide domain protein; KEGG: sen:SACE_1897 regulatory protein.
 
     0.842
Caci_3691
KEGG: sgr:SGR_4411 hypothetical protein.
 
    0.836
Caci_3696
PFAM: protein of unknown function DUF181; KEGG: sgr:SGR_4417 hypothetical protein.
 
     0.824
Caci_1556
PFAM: NB-ARC domain protein; TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: sen:SACE_0488 SARP family transcriptional regulator.
 
    0.788
Caci_3689
PFAM: protein of unknown function DUF181; KEGG: sgr:SGR_4409 hypothetical protein.
       0.786
Caci_4657
Transcriptional regulator, winged helix family; PFAM: transcriptional regulator domain protein; transcriptional activator domain; SMART: AAA ATPase; KEGG: fra:Francci3_2022 transcriptional regulator.
 
  
 0.785
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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