STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_3699Hypothetical protein; KEGG: fre:Franean1_3837 transposase IS4 family protein. (680 aa)    
Predicted Functional Partners:
Caci_4186
PFAM: major facilitator superfamily MFS_1; KEGG: rsa:RSal33209_0919 MFS transporter.
  
     0.623
Caci_8689
KEGG: lbl:LBL_2852 hypothetical protein.
  
     0.598
Caci_8544
PFAM: transposase IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: fra:Francci3_4216 transposase IS116/IS110/IS902.
 
     0.587
Caci_3219
KEGG: mxa:MXAN_6381 hypothetical protein.
  
     0.583
Caci_3886
KEGG: fra:Francci3_4113 IS630 family transposase.
  
  
 0.476
Caci_3160
PFAM: transposase IS116/IS110/IS902 family protein; transposase IS111A/IS1328/IS1533; KEGG: sco:SCO7782 IS110 transposase.
 
     0.461
Caci_3811
PFAM: regulatory protein DeoR; Helix-turn-helix type 11 domain protein; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein DeoR; KEGG: sgr:SGR_2764 DeoR family transcriptional regulator.
  
    0.455
Caci_8543
PFAM: transposase IS204/IS1001/IS1096/IS1165 family protein; KEGG: mbb:BCG_3860 putative transposase.
  
  
 0.446
Caci_1631
SMART: helix-turn-helix domain protein; KEGG: fre:Franean1_1330 XRE family transcriptional regulator.
  
     0.438
Caci_4187
Transcriptional regulator, ArsR family; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; KEGG: sgr:SGR_4106 ArsR family transcriptional regulator.
  
     0.425
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.